analyze_channel

Runs the full analysis pipeline for a single channel within a given interval, including period estimation, coherence metrics, AUC, network analysis, and summary statistics.

Usage

analyze_channel(channel_name, channel_ctx, file_ctx, params)

Arguments

channel_name

A character string identifying the channel (e.g. "Ch1").

channel_ctx

A named list of channel context data containing grid_vals (matrix of cell fluorescence traces, cells × frames), grid_points_sf (sf object of grid points), scn_roi (sf object), grid_coord (data frame of grid coordinates), invert (logical), and ch_label (character).

file_ctx

A named list of file context data as produced by prepare_file().

params

A named list of analysis parameters as produced by make_params().

Value

A named list with elements ch_id, ch_label, cells (input grid values matrix), period_table, auc_results, network_results, circular_stats, period_summary (data frame), detrended_traces, mut_inf, and status.

Examples

if (FALSE) { # \dontrun{
ch_result <- analyze_channel("Ch1", channel_ctx, file_ctx, params)
} # }