Reorder and relabel network clusters

Reorder and relabel network clusters

Usage

order_clusters(
  graph_obj,
  node_data,
  cluster_order = "size",
  network_dir,
  interval_name = int_list$name,
  cluster_threshold = 3
)

Arguments

graph_obj

An igraph object with vertex attribute module.

node_data

Data frame of node metadata including columns name, cluster, and phase_circ.

cluster_order

Character; ordering criterion, either "size" (decreasing) or "phase" (ascending mean phase). Defaults to "size".

network_dir

Character; directory used for saving cluster outputs.

interval_name

Character; interval label.

cluster_threshold

Integer; clusters with this many cells or fewer are collapsed into "NULL". Defaults to 3.

Value

A named list with elements g (updated igraph object), node_data (updated data frame with relabelled cluster factor), and mean_phase_per_cluster (data frame or NULL).