Remove outliers, smooth, and detrend fluorescence traces

Remove outliers, smooth, and detrend fluorescence traces

Usage

preprocess_data(data, grade, mode = "mov_avg", parallel = FALSE)

Arguments

data

Numeric matrix of fluorescence traces with a leading time column (time × cells).

grade

Integer; polynomial degree used for detrending.

mode

Character; smoothing method — currently only "mov_avg" (moving average) is supported. Defaults to "mov_avg".

parallel

Logical; reserved for future parallelisation. Defaults to FALSE.

Value

A numeric matrix of the same dimensions as data with smoothed and detrended traces.